Genetic variation of subalpine fir in Olympic Mountains, WA: Association between heterozygosity and growth rate In: Growth of subalpine fir (abies lasiocarpa) in the Olympic Mountains, Washington: Response to Climate and Genetic Variation

Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator: Gregory John Ettl
Publication_Date: 1995
Title:
Genetic variation of subalpine fir in Olympic Mountains, WA: Association between heterozygosity and growth rate In: Growth of subalpine fir (abies lasiocarpa) in the Olympic Mountains, Washington: Response to Climate and Genetic Variation
Series_Information:
Series_Name: Dissertation
Publication_Information:
Publication_Place: Seattle, Washington
Publisher: University of Washington
Description:
Abstract:
This study examines the genetic structure of subalpine fir along an elevation gradient in the Olympic Mountains, Washington. Starch gel electrophoresis was used to resolve 15 isozyme loci from 9 populations on 3 mountains. First, we describe the genetic variation of these 9 populations in the Olympic Mountains, and compare these results to those of other tree species. Then we compare genetic differentiation (GST) among populations to test if selective pressures alter genotypic frequencies in response to steep environmental gradients over the elevation range of this species. Genetic variation is relatively uniform throughout most of the sites sampled (Ho range = 0.103-0.139 in the eastern Olympic Mountains), with notably lower diversity observed at the western extent of subalpine fir's range (Ho=0.70 in the central Olympic Mountains). Lower diversity in the western Olympics may result from either founder effects as the species expanded its range from a glacial refugium, or from selection pressures on the loci considered. Genetic differentiation is greater among high elevation sites on different mountains, than among different elevation sites on the same mountain, or lower elevation sites on different mountains. Estimates of gene flow (Nm=7.8) are high among all sites. Therefore, we conclude that differentiation among high-elevation sites is probably caused by selection under limiting environmental conditions near treeline, although differentiation from founder effects cannot be ruled out. This study also compares the growth response of subalpine fir (Abies lasiocarpa) in genetically differing groups of individuals along an elevation gradient in the Olympic Mountains, Washington. Individuals of varying levels of both multi-locus heterozygosity and differing single-locus genotypes are classified, and their mean growth response is compared to levels of genetic variation.
Purpose:
Differences in growth responses among different genetic classes along the elevation gradient may provide information on the effects of genetic diversity on subalpine fir's response to climate change throughout its range in the Olympics.
Supplemental_Information:
The geographic coordinates for this study are the coordinates of the Olympic Peninsula, estimated from as USGS 1:24000 map. For exact coordinates of the study sites, please contact the author.
Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 1995
Currentness_Reference: Observed
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None Planned
Spatial_Domain:
Description_of_Geographic_Extent: Olympic Peninsula, Washington
Bounding_Coordinates:
West_Bounding_Coordinate: -124.7
East_Bounding_Coordinate: -122.6
North_Bounding_Coordinate: 48.4
South_Bounding_Coordinate: 46.9
Keywords:
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: heterozygosity
Theme_Keyword: growth rate
Theme_Keyword: subalpine fir
Theme_Keyword: Abies lasiocarpa
Theme_Keyword: allozyme variation
Theme_Keyword: tree
Theme_Keyword: gene flow
Theme_Keyword: genetic diversity
Place:
Place_Keyword_Thesaurus: None
Place_Keyword: USA
Place_Keyword: Washington
Place_Keyword: Olympic Peninsula
Stratum:
Stratum_Keyword_Thesaurus: None
Temporal:
Temporal_Keyword_Thesaurus: None
Taxonomy:
Taxonomic_Keywords: Abies lasiocarpa
Taxonomic_Keywords: subalpine fir
Taxonomic_Keywords: Single Species
Taxonomic_Coverage:
Specific_Taxonomic_Information:
Kingdom: Plant
Division-Phylum: Coniferophyta
Class: Pinopsida
Order: Pinales
Family: Pinaceae
Genus: Abies
Species: Abies lasiocarpa
Applicable_Common_Names: Subalpine Fir
Access_Constraints:
Contact author for data. Dissertation may be obtained from interlibrary loan or distributor.
Use_Constraints: Must site author if using data in publication.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Gregory Ettl
Contact_Organization: St. Joseph's University
Contact_Address:
Address_Type: Mailing and Physical Address
Address: Department of Biology
Address: St. Joseph's University
Address:
City: Avenue
City: Philadelphia
State_or_Province: PA
Postal_Code: 19131
Country: USA
Contact_Voice_Telephone: 610/660-1830
Contact_Electronic_Mail_Address: ettl@sju.edu
Security_Information:
Security_Classification_System: None
Security_Classification: Unclassified
Security_Handling_Description: None

Data_Quality_Information:
Lineage:
Methodology:
Methodology_Type: Field and Lab
Methodology_Identifier:
Methodology_Keyword_Thesaurus: None
Methodology_Keyword: vegetation sampling
Methodology_Keyword: dendrochronology
Methodology_Keyword: allozyme analysis
Methodology_Keyword: genetic analysis
Methodology_Description:
Data Collection and Processing

Subalpine fir populations were sampled at 3 elevations on southwest-facing slopes on Klahhane Ridge, Blue Mountain: the upper (treeline), middle, and lower extent of its elevation range. At least 50 trees were sampled from 20 m-wide band transects at each site. In addition, 30 trees were sampled from treeline at Mount Dana, the westernmost extent of subalpine fir in the Olympic Mountains. Only trees with dominant or codominant crown classification (Spurr and Barnes 1980) were sampled to reduce variation in growth trends related to competition. Trees at middle and low elevations on Blue Mountain were sampled from 2 sites (separated by approximately 200 m at each elevation) in order to minimize differences in slope and aspect thereafter Blue Mountain low-1 and low-2, middle-1 and middle-2). Trees with major stem or crown deformities were avoided.

Two cores were extracted with an increment borer at 1.1-1.4 m height on the cross-slope sides of each tree. Cores were mounted in wooden blocks and sanded until individual tracheids were visible. All cores were crossdated (visually -- Swetnam et al. 1985, and verified with COFECHA -- Holmes 1983), and one core from each tree (the core with the fewest instances of reaction wood) was measured to the nearest 0.01 mm with an incremental measuring machine (Robinson and Evans 1980). Basal area growth increments (BAI) were created from DBH and ring width measurements for each tree.

A 15-20 cm section of shade foliage was clipped from the lower branches on the north-facing side of each sample tree. The cuttings were placed on ice and kept cool to suspend biological activity until processing. All foliage samples were processed within four weeks of collection. While processing leaf tissue within a week (the majority of these samples were processed within a week) is recommended to maintain the full compliment of available enzymes (Cheliak and Pitel 1984), we observed little reduction in enzyme quality in samples that were stored for 4 weeks prior to processing. Needles were initially ground with a mortar and pestle in liquid nitrogen and a grinding buffer (after Mitton et al. 1979). Preliminary electrophoretic trials of enzymes ground in this buffer showed poor resolution of banding patterns, and 4 other grinding buffers were also tried in an effort to maximize the number and resolution of enzymes; buffers included a simple seed buffer, simple seed buffer with polyvinyl pyrolidone added, Melody's buffer (Diane Delany USDA Forest Service Albany, CA, personal communication), Soltis's buffer (after Soltis 1983), and a modification of Melody's buffer (with bovine albumin and sucrose added. A comparison of banding patterns resolved from these 5 grinding buffers showed that the modified Melody's buffer provided the largest number of enzymes resolved with relatively clear banding patterns. In addition, the modified Melody's buffer had the advantage of being less noxious than other buffers because it does not contain 2-mercaptoethanol. The solutions obtained from grinding leaf tissue were separated, and solutions from individuals were stored in microtiter trays in an ultralow temperature freezer (-70° C). Samples were subsequently stored on dry ice and flown to the USDA Forest Service Institute of Forest Genetics (IFG) lab in Albany, California, where allozyme analysis was conducted.

Process_Step:
Process_Description:
Allozyme and Genetic Analysis

Leaf tissue solutions were subjected to electrophoretic separation on starch gels using techniques of Conkle et al. (1982) and Millar (1985), and gel systems of Strauss and Conkle (1986) and Wendel and Weeden (1989). An initial screening was performed to determine enzyme activity for 33 different enzymes on 6 different gel systems. Fifteen loci from 12 enzyme systems showed strong and repeatable resolution: aspartate aminotransferase (AAT-1 and AAT-2, EC 2.6. 1.1), fructose-biphosphate aldolase (ALD, EC 4.1.2.13), fructose-l ,6-diphosphate (FDP, EC 3.1.3.11), â-D-galactoside galactohydrolase (GAL, EC 3.2.1.23), isocitrate dehydrogenase (IDH, EC 1.1.1.42), malate dehydrogenase (MDH-1 and MDH-2, EC 1.1.1.37), peptidase (PEP, EC 3.4.11.1), peroxidase (PER, EC 1.11.1.7), phosphoglucoisomerase (PGI-1 and PGI-2, EC 5.3.1.9) phosphoglucomutase (PGM, EC 5.4.2.2), 6-phosphogluconate dehydrogenase (SIX, EC 1.1.1.44), and UDP-glucose pyrphosphorylase (UGP, EC 2.7.7.9). These loci were scored on 5 different gel systems. Diploid genotypes were interpreted from segregation patterns and comparison of allozyme phenotypes of the same enzymes for related species (Diane Delany USDA Forest Service Albany, CA, personal communication).

Allele frequencies, mean number of alleles per locus, percentage of polymorphic loci (alleles were classified as polymorphic if more than 1 allele was observed), and mean heterozygosity levels (computed as both direct count and Hardy- Weinberg expectations) were calculated for each site. Deviations from Hardy- Weinberg equilibrium were assessed with Chi-square analysis; allele frequencies were pooled when frequencies of some classes were low, and Yates' correction for continuity was applied. Subdivison of genetic structure among sites was assessed with Chi-square tests for differences of allele frequencies, F-statistics (Wright 1965, Nei 1972, 1973, 1977), and Nei's unbiased genetic distance (calculated with exclusion of 6 monomorphic loci, Nei 1978). Chi-square analyses of allele frequencies were compared both by elevation for mountains and between different mountains for all elevations. Unweighted pair-group method (UPGMA) cluster analysis (Sneath and Sokal 1973) was used to visualize differences in genetic distance among groups. All analyses were performed with the program BIOSYS-1 (Swofford and Selander f989). The program GeneStat-PC (Lewis and Whitkus 1993) was used to calculate Hamrick and Godt's (1990) Hes (the average genetic heterozygosity over all loci) in order to compare heterozygosity levels in subalpine fir with other conifer species.

Comparisons

A simple arithmetic mean of basal area increment (BAI) growth for the time period 1950-1990 (1970-1990 for Blue Mountain high elevation) was compared with the number of heterozygous loci for each individual to determine the effect of genetic variability on growth. The time period 1950-1990 was selected for comparison because BAI calculated from ring width measurements has substantially lower growth land variance) during the first 20 years that BAI values are calculated (visual inspection of data). Large errors in BAI calculations occur early in BAI series when there is a large difference between the actual ring width measurements (total of all ring width measurements to the center of the tree) and the distance to the center of the tree estimated from DBH (used in calculated BAI). Because some trees on most sites date back to the early 1900's, the time period 1950-1990 maximizes sample size. The time period 1970-1990 was compared for Blue Mountain high elevation land subsequently Klahhane Ridge high elevation), because many trees dated back to only the 1930's on this site. Mean BAI from the 2 time periods (1950-1990 and 1970-1990) are highly correlated (r² = .95) for all individuals on high elevation sites.

A comparison of BAI growth and different genotypes for polymorphic loci were also compared among individuals for each site. Preliminary analysis revealed similar patterns of both multi-locus and allozyme-specific genetic relationships with growth among elevations. Relationships were therefore summarized by elevation; high elevation sites included only Blue Mountain and Klahhane Ridge (Mount Dana was excluded because of its relatively lower genetic variability). Kruskal-Wallis and Mann-Whitney U-test statistics (Zar 1984) were used to compare growth differences among groups and between pairs of groups of genetically different individuals. These tests were chosen over comparable parametric tests (e.g., Tukey's multiple comparison, one-way ANOVA, or t-statistic for unequal variances) because groups often differ in sample size (most heterozygotes are rare), and the variance in growth response is partially dependent on sample size.

Relationships were explored between tree age, mean basal area growth, and genotypic frequencies for each locus to determine if any observed differences in growth-genetic relationships were related to differences in allele frequencies among age groups (even though growth rate is not associated with age). Trees were first aggregated by elevation, then divided into 2 age groups at each elevation to include equal numbers of individuals in each group. Chi-square analyses of allele frequencies of individuals from different age groups were compared at each elevation.

Process_Date: 1994-1995
Process_Time: Unknown
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Gregory Ettl
Contact_Organization: St. Joseph's University
Contact_Address:
Address_Type: Mailing and Physical Address
Address: Department of Biology
Address: St. Joseph's University
Address:
City: Avenue
City: Philadelphia
State_or_Province: PA
Postal_Code: 19131
Country: USA
Contact_Voice_Telephone: 610/660-1830
Contact_Electronic_Mail_Address: ettl@sju.edu

Spatial_Data_Organization_Information:
Indirect_Spatial_Reference: Olympic Peninsula, Washington, USA

Spatial_Reference_Information:

Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: Site characteristics
Attribute:
Attribute_Label: Site name
Entity_Type:
Entity_Type_Label: Site characteristics
Attribute:
Attribute_Label: Elevation (m)
Entity_Type:
Entity_Type_Label: Site characteristics
Attribute:
Attribute_Label: DBH
Attribute_Definition: Diameter at breast height of sampled subalpine fir
Entity_Type:
Entity_Type_Label: Site characteristics
Attribute:
Attribute_Label: Core sample
Entity_Type:
Entity_Type_Label: Site characteristics
Attribute:
Attribute_Label: foliage sample
Entity_Type:
Entity_Type_Label: Enzymes
Entity_Type_Definition:
Enzymes and enzyme systems tested for Abies lasiocarpa.
Attribute:
Attribute_Label: Enzyme
Entity_Type:
Entity_Type_Label: Enzymes
Entity_Type_Definition:
Enzymes and enzyme systems tested for Abies lasiocarpa.
Attribute:
Attribute_Label: Gel Systems
Entity_Type:
Entity_Type_Label: Enzymes
Entity_Type_Definition:
Enzymes and enzyme systems tested for Abies lasiocarpa.
Attribute:
Attribute_Label: Stain recipe
Attribute_Definition: creator of stain recipe
Entity_Type:
Entity_Type_Label: Enzymes
Entity_Type_Definition:
Enzymes and enzyme systems tested for Abies lasiocarpa.
Attribute:
Attribute_Label: Results
Entity_Type:
Entity_Type_Label: BAI
Entity_Type_Definition:
Basal area increment growth for lasiocarpa from 1950-1990.
Attribute:
Attribute_Label: BAI
Attribute_Definition: Basal Area Increment
Entity_Type:
Entity_Type_Label: BAI
Entity_Type_Definition:
Basal area increment growth for lasiocarpa from 1950-1990.
Attribute:
Attribute_Label: site name
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Site name
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Genetic distance
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Mean sample/size locus
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Mean # of alleles/locus
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Percentage of loci polymorphic
Entity_Type:
Entity_Type_Label: Genetic analysis
Attribute:
Attribute_Label: Mean heterozygosity
Entity_Type:
Entity_Type_Label: Allozymes
Entity_Type_Definition:
Estimated allozyme frequencies of allozymes for 9 populations of subalpine fir.
Attribute:
Attribute_Label: Site name
Entity_Type:
Entity_Type_Label: Allozymes
Entity_Type_Definition:
Estimated allozyme frequencies of allozymes for 9 populations of subalpine fir.
Attribute:
Attribute_Label: Elevation
Entity_Type:
Entity_Type_Label: Allozymes
Entity_Type_Definition:
Estimated allozyme frequencies of allozymes for 9 populations of subalpine fir.
Attribute:
Attribute_Label: Allozyme
Entity_Type:
Entity_Type_Label: F-statistics
Entity_Type_Definition:
Mean F-statistics for all 9 sites of subalpine fir
Attribute:
Attribute_Label: Locus
Entity_Type:
Entity_Type_Label: F-statistics
Entity_Type_Definition:
Mean F-statistics for all 9 sites of subalpine fir
Attribute:
Attribute_Label: F(IS)
Entity_Type:
Entity_Type_Label: F-statistics
Entity_Type_Definition:
Mean F-statistics for all 9 sites of subalpine fir
Attribute:
Attribute_Label: F(IT)
Entity_Type:
Entity_Type_Label: F-statistics
Entity_Type_Definition:
Mean F-statistics for all 9 sites of subalpine fir
Attribute:
Attribute_Label: F (ST)
Entity_Type:
Entity_Type_Label: Allele frequencies
Entity_Type_Definition: Comparison of allele frequencies among all sites.
Attribute:
Attribute_Label: Locus
Entity_Type:
Entity_Type_Label: Allele frequencies
Entity_Type_Definition: Comparison of allele frequencies among all sites.
Attribute:
Attribute_Label: Site name
Entity_Type:
Entity_Type_Label: BAI and heterozygosity
Entity_Type_Definition:
Comparison of mean and standard deviation in basal area increment with multi-locus heterozygosity for individuals grouped by elevation.
Attribute:
Attribute_Label: mean basal area growth (1950-1990)
Entity_Type:
Entity_Type_Label: BAI and heterozygosity
Entity_Type_Definition:
Comparison of mean and standard deviation in basal area increment with multi-locus heterozygosity for individuals grouped by elevation.
Attribute:
Attribute_Label: heterozygosity class
Entity_Type:
Entity_Type_Label: BAI and heterozygosity
Entity_Type_Definition:
Comparison of mean and standard deviation in basal area increment with multi-locus heterozygosity for individuals grouped by elevation.
Attribute:
Attribute_Label: standard deviation basal area growth (1950-1990)
Entity_Type:
Entity_Type_Label: BAI and heterozygosity
Entity_Type_Definition:
Comparison of mean and standard deviation in basal area increment with multi-locus heterozygosity for individuals grouped by elevation.
Attribute:
Attribute_Label: Elevation
Entity_Type:
Entity_Type_Label: Mean basal area growth
Entity_Type_Definition:
Comparison of mean basal area growth among individuals with differing genotypes for selected allozymes.
Attribute:
Attribute_Label: elevation
Entity_Type:
Entity_Type_Label: Mean basal area growth
Entity_Type_Definition:
Comparison of mean basal area growth among individuals with differing genotypes for selected allozymes.
Attribute:
Attribute_Label: mean basal area growth (1950-1990)
Entity_Type:
Entity_Type_Label: Mean basal area growth
Entity_Type_Definition:
Comparison of mean basal area growth among individuals with differing genotypes for selected allozymes.
Attribute:
Attribute_Label: genotype

Distribution_Information:
Distributor:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Gregory Ettl
Contact_Organization: St. Joseph's University
Contact_Address:
Address_Type: Mailing and Physical Address
Address: Department of Biology
Address: St. Joseph's University
Address:
City: Avenue
City: Philadelphia
State_or_Province: PA
Postal_Code: 19131
Country: USA
Contact_Voice_Telephone: 610/660-1830
Contact_Electronic_Mail_Address: ettl@sju.edu
Resource_Description: dissertation
Standard_Order_Process:
Non-digital_Form:
A copy of the dissertation may be obtained from the author, interlibrary loan, or University Microfilms, 1490 Eisenhower Place, PO Box 975, Ann Arbor, MI 48106.
Fees: unknown

Metadata_Reference_Information:
Metadata_Date: 19980729
Metadata_Review_Date: 19990217
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: Olympic Natural Resources Center
Contact_Position: GIS Specialist
Contact_Address:
Address_Type: Mailing Address
Address: PO Box 1628
City: Forks
State_or_Province: WA
Postal_Code: 98331
Country: USA
Contact_Voice_Telephone: 360.374.3220 x258
Contact_Facsimile_Telephone: 360.374.3336
Contact_Electronic_Mail_Address: onrc@u.washington.edu
Hours_of_Service: M-F 8-5
Contact_Instructions: Email preferred
Metadata_Standard_Name:
Content Standards for National Biological Information Infrastructure Metadata
Metadata_Standard_Version:
NBII Draft of December 1995, Based FGDC of June 8, 1994
Metadata_Access_Constraints: None
Metadata_Use_Constraints: None
Metadata_Security_Information:
Metadata_Security_Classification_System: None
Metadata_Security_Classification: Unclassified
Metadata_Security_Handling_Description: None

Generated by mp on Thu Feb 18 12:58:47 1999